graph_neighborhood: Graph depth method based method to select niche
In patrickCNMartin/Vesalius: Vesalius: Dissecting Tissue Anatomy from Spatial Transcriptomic Data
graph_neighborhood R Documentation
Graph depth method based method to select niche
Description
Graph depth method based method to select niche
Usage
graph_neighborhood(coord, depth)
Arguments
coord
data.frame - coordinates of spatial indices in assay
depth
int - graph path depth to define neighborhood
0 = self, 1 = direct neigbors, 2 = neighbors of neighbors, etc
Value
list containing barcodes of neighbors for each
spatial index.
patrickCNMartin/Vesalius documentation built on April 17, 2025, 11:31 p.m.
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| graph_neighborhood | R Documentation |
Graph depth method based method to select niche
Description
Graph depth method based method to select niche
Usage
graph_neighborhood(coord, depth)
Arguments
coord |
data.frame - coordinates of spatial indices in assay |
depth |
int - graph path depth to define neighborhood 0 = self, 1 = direct neigbors, 2 = neighbors of neighbors, etc |
Value
list containing barcodes of neighbors for each spatial index.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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