leiden_segmentation: leiden segmentation

In patrickCNMartin/Vesalius: Vesalius: Dissecting Tissue Anatomy from Spatial Transcriptomic Data

leiden segmentation

Description

using leiden clustering to cluster colors

Usage

leiden_segmentation(
  vesalius_assay,
  dimensions = seq(1, 3),
  col_resolution = 0.01,
  embedding = "last",
  verbose = TRUE
)

Arguments

vesalius_assay	a vesalius_assay object
dimensions	embedding dimensions used for clustering
col_resolution	clustering resolution used for leiden
embedding	embedding type used for clustering
verbose	logical if progress message should outputed

Value

list with updated segmented embedding values and segment territories.

patrickCNMartin/Vesalius documentation built on April 17, 2025, 11:31 p.m.