no_norm: no norm

In patrickCNMartin/Vesalius: Vesalius: Dissecting Tissue Anatomy from Spatial Transcriptomic Data

no norm

Description

no normalisation applied simply return raw counts

Usage

no_norm(counts, use_count = "raw")

Arguments

counts	seurat object containing counts
use_count	string describing name that needs to be added to list element. This list will be appended to the count slot in the vesalius_assay.

Details

Here, either the user doesn't want to normalise the data or they provide their custom count matrix. In this case, we parse it as "none" to avoid writing another function and add the custom name.

Value

list with seurat object used later and raw counts to be stored in the vesalius objects

patrickCNMartin/Vesalius documentation built on April 17, 2025, 11:31 p.m.