optimize_matching: optimize matching scores through batching
In patrickCNMartin/Vesalius: Vesalius: Dissecting Tissue Anatomy from Spatial Transcriptomic Data
optimize_matching R Documentation
optimize matching scores through batching
Description
optimize matching scores through batching
Usage
optimize_matching(cost_matrix, batch_size = 10000, epochs = 1, verbose = TRUE)
Arguments
cost_matrix
matrix containing mapping cost for each cell
batch_size
int - number of cells to be assigned to each batch
verbose
logical - output progress messages
epoch
number of epochs to run the optimization
Value
list with best matching cell pairs (data.frame) and
total cost at each epoch
patrickCNMartin/Vesalius documentation built on April 17, 2025, 11:31 p.m.
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| optimize_matching | R Documentation |
optimize matching scores through batching
Description
optimize matching scores through batching
Usage
optimize_matching(cost_matrix, batch_size = 10000, epochs = 1, verbose = TRUE)
Arguments
cost_matrix |
matrix containing mapping cost for each cell |
batch_size |
int - number of cells to be assigned to each batch |
verbose |
logical - output progress messages |
epoch |
number of epochs to run the optimization |
Value
list with best matching cell pairs (data.frame) and total cost at each epoch
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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