rebalence_colors: rebalence colors

In patrickCNMartin/Vesalius: Vesalius: Dissecting Tissue Anatomy from Spatial Transcriptomic Data

rebalence colors

Description

rebalence colors

Usage

rebalence_colors(coordinates, dimensions, method = "minmax")

Arguments

coordinates	data frame containing barcodes, x/y coord, origin, and color value.
dimensions	number dimensions select for plotting
method	character string: min max or truncate

Details

This function is use to re-bound values between 0 and 1. Some image processing steps may lead to negative values being introduced. Imager handles this without an issue but for plotting we want to make sure that all values are indeed bound between 0 and 1. We will try to different methods either we truncate the value or we min max norm.

Value

data frame with [0,1] bound values

patrickCNMartin/Vesalius documentation built on April 17, 2025, 11:31 p.m.