reduce_tensor_resolution: reduce tensor resoltuon

In patrickCNMartin/Vesalius: Vesalius: Dissecting Tissue Anatomy from Spatial Transcriptomic Data

reduce tensor resoltuon

Description

reduce the size of the image tensor by merging barcodes together after compressing coordinates values

Usage

reduce_tensor_resolution(coordinates, tensor_resolution = 1)

Arguments

coordinates	data frame with barcode coordinates
tensor_resolution	numeric (range 0 - 1) describing the compression ratio to be applied to the final image. Default = 1

Details

While we compress the coordinates, we retain all barcodes. Each barcode that overlap with each other are marged together. Their respective counts will also be merged together. This allows us to retain all barcodes for downstream analysis.

Value

a data frame with barcodes, x and coordinates

patrickCNMartin/Vesalius documentation built on April 17, 2025, 11:31 p.m.