rename_counts: renaming counts to remain consistent with vesalius...
In patrickCNMartin/Vesalius: Vesalius: Dissecting Tissue Anatomy from Spatial Transcriptomic Data
rename_counts R Documentation
renaming counts to remain consistent with vesalius nomenclature
Description
renaming counts to remain consistent with vesalius nomenclature
Usage
rename_counts(integrated, seed_cells, seed_genes, query_cells, query_genes)
Arguments
integrated
seurat object containing integrated count data
seed_cells
character vector contain seed barcodes
seed_genes
character vector contain seed genes
query_cells
character vector contain query barcodes
query_genes
character vector contain query genes
Value
list of count matrices with cell and gene names added and
each matrix is renamed to follow the vesalius nomencalture
patrickCNMartin/Vesalius documentation built on April 17, 2025, 11:31 p.m.
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| rename_counts | R Documentation |
renaming counts to remain consistent with vesalius nomenclature
Description
renaming counts to remain consistent with vesalius nomenclature
Usage
rename_counts(integrated, seed_cells, seed_genes, query_cells, query_genes)
Arguments
integrated |
seurat object containing integrated count data |
seed_cells |
character vector contain seed barcodes |
seed_genes |
character vector contain seed genes |
query_cells |
character vector contain query barcodes |
query_genes |
character vector contain query genes |
Value
list of count matrices with cell and gene names added and each matrix is renamed to follow the vesalius nomencalture
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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