search_log: search through log for parameter values or names

In patrickCNMartin/Vesalius: Vesalius: Dissecting Tissue Anatomy from Spatial Transcriptomic Data

search through log for parameter values or names

Description

search through log for parameter values or names

Usage

search_log(vesalius_assay, arg, return_assay = TRUE)

Arguments

vesalius_assay	a vesalius_assay object
arg	string indicating which parameter value or argument name should be searched for
return_assay	logical indicating if the log list should returned or only the value.

Details

You may search through the log to see if you have used certain parameters and if so which values did you use when running a certain trial. If 'return_assay' is 'TRUE' then the entire log call will be returned. This will include all parameter values including defaults parse to function.

Value

either a list containing log calls or values found in call

Examples

## Not run: 
data(vesalius)
# First we build a simple object
ves <- build_vesalius_object(coordinates, counts)
# We can do a simple run 
ves <- build_vesalius_embeddings(ves)
# maybe we want to try a different method 
# both will be stored in the object
ves <- build_vesalius_embeddings(ves, dim_reduction = "UMAP")

# search log 
search_log(ves, "tensor_resolution")

## End(Not run)

patrickCNMartin/Vesalius documentation built on April 17, 2025, 11:31 p.m.