select_initial_indices: select inital indices

In patrickCNMartin/Vesalius: Vesalius: Dissecting Tissue Anatomy from Spatial Transcriptomic Data

select inital indices

Description

select inital indices

Usage

select_initial_indices(
  coordinates,
  embeddings,
  type = "bubble",
  n_centers = 500,
  max_iter = 500
)

Arguments

coordinates	data frame containing spatial coordinates of beads
embeddings	matrix containing embedding values - full pixel image
n_centers	numeric number of beads to select as super pixel centers
max_iter	numeric number of iteration before returning result if no coveregnce.

Value

barcodes of starting coordinates

patrickCNMartin/Vesalius documentation built on April 17, 2025, 11:31 p.m.