signal_similarity: compute the similarity between seed and query signals

In patrickCNMartin/Vesalius: Vesalius: Dissecting Tissue Anatomy from Spatial Transcriptomic Data

compute the similarity between seed and query signals

Description

compute the similarity between seed and query signals

Usage

signal_similarity(seed, query, method = "pearson", digits = 4)

Arguments

seed	seed signal
query	query signal

Details

Chunking cost and signal into smaller chunks to run the correlation score in paralell. There is room for improvement here. First we could dispatch the longer list to future_lapply but cannot know which one it is and we need to know that so we can subset the cost. Also the functions calls feature_cost which is a R wrapper for a c++ function (cost.cpp).

Value

matrix with query as rows and seed as colmuns

patrickCNMartin/Vesalius documentation built on April 17, 2025, 11:31 p.m.