vesalius_deg: Internal differantial gene expression function.

In patrickCNMartin/Vesalius: Vesalius: Dissecting Tissue Anatomy from Spatial Transcriptomic Data

Internal differantial gene expression function.

Description

This function dispatches the groups to the various methods That are avialbale

Usage

vesalius_deg(
  seed,
  query,
  seed_id,
  query_id,
  method,
  log_fc,
  pval,
  min_pct,
  min_spatial_index,
  verbose = TRUE,
  args
)

Arguments

seed	= group1 count data
query	= group 2 count data
seed_id	= territory ID's for group 1
query_id	= territory ID's for group 2
method	= DEG stat method
log_fc	= fold change threshold
pval	= p value threshold
min_pct	= minimum percentage of barcodes that should contain a given gene
min_spatial_index	= minimum number of barcodes present in a territory
verbose	= progress message output
args	arguments parse to (...) in upper level function (not functional)

patrickCNMartin/Vesalius documentation built on April 17, 2025, 11:31 p.m.