R/data.R

In patrickCNMartin/Vesalius: Vesalius: Dissecting Tissue Anatomy from Spatial Transcriptomic Data

#' Spatial coordinates
#'
#'
#' @docType data
#' @keywords datasets
#' @name coordinates 
#' @usage data(vesalius)
#' @source \url{https://singlecell.broadinstitute.org/single_cell/study/SCP948/robust-decomposition-of-cell-type-mixtures-in-spatial-transcriptomics#study-download}
#' @format coordinate data frame
#' \describe{
#'  \item{coordinates}{spatial coodinates of Puck_200815 taken from slide-seV2}
#' }
#'
NULL

#' Count matrix for vesalius
#'
#'
#' @docType data
#' @keywords datasets
#' @name counts
#' @usage data(vesalius)
#' @source \url{https://singlecell.broadinstitute.org/single_cell/study/SCP948/robust-decomposition-of-cell-type-mixtures-in-spatial-transcriptomics#study-download}
#' @format  sparse count matrix
#' \describe{
#'  \item{counts}{gene counts of Puck_200815 taken from slide-seV2}
#' }
#'
NULL

#' Spatial coordinates - alt
#'
#'
#' @docType data
#' @keywords datasets
#' @name jitter_coord
#' @usage data(vesalius)
#' @source \url{https://singlecell.broadinstitute.org/single_cell/study/SCP948/robust-decomposition-of-cell-type-mixtures-in-spatial-transcriptomics#study-download}
#' @format coordinate data frame 
#' \describe{
#'  \item{jitter_coord}{Sampled, flipped, and jittered coordinates of Puck_200815 taken from slide-seV2}
#' }
#'
NULL

#' Count matrix for vesalius - alt
#'
#'
#' @docType data
#' @keywords datasets
#' @name jitter_counts
#' @usage data(vesalius)
#' @source \url{https://singlecell.broadinstitute.org/single_cell/study/SCP948/robust-decomposition-of-cell-type-mixtures-in-spatial-transcriptomics#study-download}
#' @format sparse count matrix
#' \describe{
#'  \item{counts}{Sampled and jittered counts from Puck_200815 taken from slide-seV2}
#' }
#'
NULL