Man pages for paulklemm/mygo
Create Report for mus musculus dataset of GO-term analysis using clusterProfiler
| add_is_duplicated | Check if rowname is duplicated and add binary is_duplicated... |
| attach_gene_symbol_from_entrez | Add Gene Symbol from EntrezID |
| createHTMLReport | Make GO-Term analysis and print out Report |
| emap_plot | Create clusterProfiler EMA plot from go term |
| ensembl_to_entrez | Gets Entrez IDs and add it to dat |
| export_go_terms_to_excel | Export list of GO terms to Excel file TODO: Redo this! |
| get_go_all_ontologies | Get GO-terms for all ontologies |
| get_gse_all_ontologies | Get GSE-terms for all ontologies |
| get_kegg | Get KEGG GSE terms |
| get_named_fc_vector | Get named fc vector. Prepare input data as required by GSE |
| perform_enrichGO | Perform a clusterPrfiler enrichGO analysis |
| perform_gseGO | Perform a clusterProfiler gseGO analysis |
| perform_gseKEGG | Perform a clusterProfiler gseKEGG analysis |
| plot_all_ontologies | Print a couple of standard plots for provided GO ontologies |
| plot_terms_go | Print a series of clusterProfiler plots |
| plot_terms_gse | Plot GSE terms |
| simplify_ontologies | Simplify GO terms |
| volcano_plot | Return a volcano plot with annotated top_n values |
