add_is_duplicated | Check if rowname is duplicated and add binary is_duplicated... |
attach_gene_symbol_from_entrez | Add Gene Symbol from EntrezID |
createHTMLReport | Make GO-Term analysis and print out Report |
emap_plot | Create clusterProfiler EMA plot from go term |
ensembl_to_entrez | Gets Entrez IDs and add it to dat |
export_go_terms_to_excel | Export list of GO terms to Excel file TODO: Redo this! |
get_go_all_ontologies | Get GO-terms for all ontologies |
get_gse_all_ontologies | Get GSE-terms for all ontologies |
get_kegg | Get KEGG GSE terms |
get_named_fc_vector | Get named fc vector. Prepare input data as required by GSE |
perform_enrichGO | Perform a clusterPrfiler enrichGO analysis |
perform_gseGO | Perform a clusterProfiler gseGO analysis |
perform_gseKEGG | Perform a clusterProfiler gseKEGG analysis |
plot_all_ontologies | Print a couple of standard plots for provided GO ontologies |
plot_terms_go | Print a series of clusterProfiler plots |
plot_terms_gse | Plot GSE terms |
simplify_ontologies | Simplify GO terms |
volcano_plot | Return a volcano plot with annotated top_n values |
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