get_go_all_ontologies: Get GO-terms for all ontologies

View source: R/tools.R

get_go_all_ontologiesR Documentation

Get GO-terms for all ontologies

Description

Get GO-terms for all ontologies

Usage

get_go_all_ontologies(
  dat,
  significance_cutoff = 0.05,
  fc_cutoff = 0,
  use_background = TRUE,
  species = "MUS"
)

Arguments

dat

Data frame containing columns q_value, EntrezID and optionally fc

significance_cutoff

Cutoff to consider genes as significant

fc_cutoff

Fold change cutoff to consider genes as significant

use_background

Use gene list as background instead of using all genes as background

species

Either "HUM" or "MUS"


paulklemm/mygo documentation built on July 27, 2023, 11:36 a.m.