get_go_all_ontologies: Get GO-terms for all ontologies
In paulklemm/mygo: Create Report for mus musculus dataset of GO-term analysis using clusterProfiler
get_go_all_ontologies R Documentation
Get GO-terms for all ontologies
Description
Get GO-terms for all ontologies
Usage
get_go_all_ontologies(
dat,
significance_cutoff = 0.05,
fc_cutoff = 0,
use_background = TRUE,
species = "MUS"
)
Arguments
dat
Data frame containing columns q_value, EntrezID and optionally fc
significance_cutoff
Cutoff to consider genes as significant
fc_cutoff
Fold change cutoff to consider genes as significant
use_background
Use gene list as background instead of using all genes as background
species
Either "HUM" or "MUS"
paulklemm/mygo documentation built on July 27, 2023, 11:36 a.m.
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| get_go_all_ontologies | R Documentation |
Get GO-terms for all ontologies
Description
Get GO-terms for all ontologies
Usage
get_go_all_ontologies(
dat,
significance_cutoff = 0.05,
fc_cutoff = 0,
use_background = TRUE,
species = "MUS"
)
Arguments
dat |
Data frame containing columns |
significance_cutoff |
Cutoff to consider genes as significant |
fc_cutoff |
Fold change cutoff to consider genes as significant |
use_background |
Use gene list as background instead of using all genes as background |
species |
Either "HUM" or "MUS" |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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