perform_gseGO: Perform a clusterProfiler gseGO analysis
In paulklemm/mygo: Create Report for mus musculus dataset of GO-term analysis using clusterProfiler
perform_gseGO R Documentation
Perform a clusterProfiler gseGO analysis
Description
Perform a clusterProfiler gseGO analysis
Usage
perform_gseGO(ontology, fc, p_cutoff = 0.05, set_readable = TRUE)
Arguments
ontology
Can be either "BP", "CC", "MF"
fc
Named vector of foldchanges (name denotes Entrez ID)
p_cutoff
P-value cutoff for GSEA
set_readable
Replace EntrezIDs by readable gene names. This causes problems with ridgeplot
paulklemm/mygo documentation built on July 27, 2023, 11:36 a.m.
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| perform_gseGO | R Documentation |
Perform a clusterProfiler gseGO analysis
Description
Perform a clusterProfiler gseGO analysis
Usage
perform_gseGO(ontology, fc, p_cutoff = 0.05, set_readable = TRUE)
Arguments
ontology |
Can be either "BP", "CC", "MF" |
fc |
Named vector of foldchanges (name denotes Entrez ID) |
p_cutoff |
P-value cutoff for GSEA |
set_readable |
Replace EntrezIDs by readable gene names. This causes problems with ridgeplot |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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