get_gse_all_ontologies: Get GSE-terms for all ontologies
In paulklemm/mygo: Create Report for mus musculus dataset of GO-term analysis using clusterProfiler
get_gse_all_ontologies R Documentation
Get GSE-terms for all ontologies
Description
Get GSE-terms for all ontologies
Usage
get_gse_all_ontologies(
dat,
p_cutoff = 0.05,
set_readable = TRUE,
simplify = FALSE,
simplify_cutoff = 0.7
)
Arguments
dat
Table containing columns fc and EntrezID
p_cutoff
P-value cutoff for GSEA
set_readable
Replace EntrezIDs by readable gene names. This causes problems with ridgeplot
simplify
Simplify terms
simplify_cutoff
cutoff value of clusterProfiler::simplify()
paulklemm/mygo documentation built on July 27, 2023, 11:36 a.m.
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| get_gse_all_ontologies | R Documentation |
Get GSE-terms for all ontologies
Description
Get GSE-terms for all ontologies
Usage
get_gse_all_ontologies(
dat,
p_cutoff = 0.05,
set_readable = TRUE,
simplify = FALSE,
simplify_cutoff = 0.7
)
Arguments
dat |
Table containing columns |
p_cutoff |
P-value cutoff for GSEA |
set_readable |
Replace EntrezIDs by readable gene names. This causes problems with ridgeplot |
simplify |
Simplify terms |
simplify_cutoff |
cutoff value of clusterProfiler::simplify() |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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