API for pbs-assess/gfiscamutils
Provide functions for iSCAM models
| Global functions | |
|---|---|
| autocorr_plot | Man page Source code |
| batman | Man page Source code |
| c.model.list | Man page Source code |
| calc_beta_mean_cv | Man page Source code |
| calc_beta_params | Man page Source code |
| calc_logs | Man page Source code |
| calc_longer_quants | Man page Source code |
| calc_mcmc | Man page Source code |
| calc_mpd_logs | Man page Source code |
| calc_probs_biomass | Man page Source code |
| calc_quantiles | Man page Source code |
| calc_quantiles_by_group | Man page Source code |
| calc_rho_vartheta | Man page Source code |
| calc_sig_tau | Man page Source code |
| convert_prob_cols_language | Man page Source code |
| create_rds_file | Man page Source code |
| delete_files_ext | Man page Source code |
| dos.append.to.log | Man page |
| dos.pipe.to.log | Man page |
| extract_age_output | Man page Source code |
| extract_area_sex_matrices | Man page Source code |
| extract_group_matrices | Man page Source code |
| fetch_file_names | Man page Source code |
| find_f_b40 | Man page Source code |
| fix_m | Man page Source code |
| gear_lu_table | Man page Source code |
| get_estimated_params | Man page Source code |
| get_fancy_expr | Man page Source code |
| get_fancy_names | Man page Source code |
| get_group_parvals | Man page Source code |
| get_num_params_est | Man page Source code |
| get_parvals | Man page Source code |
| get_proj_biomass_raw | Man page Source code |
| gfiscam_theme | Man page Source code |
| gfiscamutils | Man page |
| gfiscamutils-package | Man page |
| is_iscam_model | Man page Source code |
| is_iscam_model_group | Man page Source code |
| is_iscam_model_list | Man page Source code |
| iscam.exe.file | Man page |
| iscam.starter.file | Man page |
| iscam_palette | Man page |
| likelihood_table | Man page Source code |
| linux.append.to.log | Man page |
| linux.pipe.to.log | Man page |
| load_iscam_files | Man page Source code |
| load_longer | Man page Source code |
| load_rds_file | Man page Source code |
| load_selest | Man page Source code |
| log.file | Man page |
| make.likelihood.table | Man page Source code |
| mcmc.age.fits.file | Man page |
| mcmc.age.resids.file | Man page |
| mcmc.biomass.file | Man page |
| mcmc.catch.file | Man page |
| mcmc.file | Man page |
| mcmc.fishing.mort.file | Man page |
| mcmc.fishing.mort.u.file | Man page |
| mcmc.index.fits.file | Man page |
| mcmc.index.resids.file | Man page |
| mcmc.index.standardized.resids.file | Man page |
| mcmc.natural.mort.file | Man page |
| mcmc.proj.file | Man page |
| mcmc.recr.devs.file | Man page |
| mcmc.recr.file | Man page |
| mcmc.sel.female.file | Man page |
| mcmc.sel.file | Man page |
| mcmc.sel.male.file | Man page |
| mcmc.sr.file | Man page |
| mcmc.vuln.biomass.file | Man page |
| mcmc_thin | Man page Source code |
| mdl_cls | Man page |
| mdl_grp_cls | Man page |
| mdl_lst_cls | Man page |
| model.class | Man page |
| model.lst.class | Man page |
| model_setup | Man page Source code |
| modify_model_path | Man page Source code |
| move_legend_to_empty_facet | Man page Source code |
| mpd.proj.file | Man page |
| output.files | Man page |
| par.file | Man page |
| plot_age_fits_mcmc | Man page Source code |
| plot_age_fits_mpd | Man page Source code |
| plot_age_resids_boxes_mcmc | Man page Source code |
| plot_age_resids_mcmc | Man page Source code |
| plot_age_resids_mpd | Man page Source code |
| plot_autocorr_mcmc | Man page Source code |
| plot_biomass_grid_mcmc | Man page Source code |
| plot_biomass_mcmc | Man page Source code |
| plot_biomass_mpd | Man page Source code |
| plot_biomass_proj_mcmc | Man page Source code |
| plot_biomass_proj_mpd | Source code |
| plot_catch_fit_mcmc | Man page Source code |
| plot_catch_fleet | Man page Source code |
| plot_distribution | Man page Source code |
| plot_f_mcmc | Man page Source code |
| plot_index_mcmc | Man page Source code |
| plot_index_mpd | Man page Source code |
| plot_pairs_mcmc | Man page Source code |
| plot_param_stats_mcmc | Man page Source code |
| plot_priors_posts_mcmc | Man page Source code |
| plot_q_mcmc | Man page Source code |
| plot_rdevs_mcmc | Man page Source code |
| plot_recr_grid_mcmc | Man page Source code |
| plot_recr_mcmc | Man page Source code |
| plot_recr_mpd | Man page Source code |
| plot_ref_points | Man page Source code |
| plot_ref_points_dist_mcmc | Man page Source code |
| plot_selex_gear_mcmc | Man page Source code |
| plot_selex_mcmc | Man page Source code |
| plot_selex_mpd | Man page Source code |
| plot_sr_mcmc | Man page Source code |
| plot_traces_mcmc | Man page Source code |
| plot_ts_mcmc | Man page Source code |
| plot_tv_selex_mpd | Man page Source code |
| plot_vuln_mcmc | Man page Source code |
| rdata.file | Man page |
| read.list | Man page Source code |
| read_control_file | Man page Source code |
| read_data_file | Man page Source code |
| read_mcmc | Man page Source code |
| read_par_file | Man page Source code |
| read_projection_file | Man page Source code |
| read_psv | Man page Source code |
| read_report_file | Man page Source code |
| rename_gear_iscam | Man page Source code |
| rep.file | Man page |
| replace_gear_name_and_save | Man page Source code |
| replace_gear_names | Man page Source code |
| retro.dir | Man page |
| run_iscam | Man page Source code |
| run_multiple_iscam | Man page Source code |
| run_retro | Man page Source code |
| sel_param_est_mpd_table | Man page Source code |
| set_dirs | Man page Source code |
| set_gear_language | Man page Source code |
| simplify_names | Man page Source code |
| standardize_comps | Man page Source code |
| strip_static_params | Man page Source code |
| table_bio_depl | Man page Source code |
| table_catch | Man page Source code |
| table_catch_area | Man page Source code Source code |
| table_catch_fleet | Man page Source code |
| table_catch_fleets | Man page Source code |
| table_decision | Man page Source code |
| table_decisions | Man page Source code |
| table_growth_params | Man page Source code |
| table_index_values | Man page Source code |
| table_iscam_param_desc | Man page Source code |
| table_param_est_mcmc | Man page Source code |
| table_param_est_mpd | Man page Source code |
| table_param_phi_mpd | Man page Source code |
| table_param_settings | Man page Source code |
| table_ref_points_mcmc | Man page Source code |
| table_ref_rate | Man page Source code |
| table_sens_param_changes | Man page Source code |
| table_sens_q | Man page Source code |
| table_ts_values_mcmc | Man page Source code |
| tex | Man page Source code |
| tr | Man page Source code |
| vec2df | Man page Source code |
| write_projection_file | Man page Source code |
