fit_sdmTMB_westcoast: Fit a geostatistical index standardization model to survey...

In pbs-assess/gfsynopsis: Data Synopsis Reports for PBS Groundfish

Fit a geostatistical index standardization model to survey data

Description

Fit a geostatistical index standardization model to survey data

Usage

fit_sdmTMB_westcoast(
  dat,
  survey,
  species_name = "",
  cutoff = 15,
  cell_width = 2,
  anisotropy = FALSE,
  silent = TRUE,
  bias_correct = FALSE,
  include_depth = FALSE
)

Arguments

survey	Survey abbreviation for the survey to fit.
species_name	Species name. Only used in the output to help with processing.
cutoff	Mesh cutoff for sdmTMB::make_mesh().
cell_width	Sell width for the prediction grid.
anisotropy	Logical for anisotropy.
silent	Logical for verbosity of output.
bias_correct	Logical for bias correction from TMB.
include_depth	Logical for whether to include depth in the model.
species_rds	File path to an .rds file from gfdata::cache_pbs_data().

Value

A list object.

pbs-assess/gfsynopsis documentation built on March 26, 2024, 7:30 p.m.