Files in pbs-assess/gfsynopsis
Data Synopsis Reports for PBS Groundfish

.Rbuildignore

.gitignore

DESCRIPTION

NAMESPACE

R/catch.R R/cpue-plots.R R/cpue.R R/data.R R/geostatistical-index.R R/get-pstar.R R/get-spp-names.R R/gfsynopsis.R R/iphc.R R/make-pages.R R/maps.R R/pdfpng.R R/scratch/cpois-hbll.R R/scratch/cpois-lingcod.R R/scratch/get-iphc-hook-data.R R/scratch/get-pstar-methods.R R/scratch/stitch-iphc.R R/stitch-iphc.R R/stitch-survey.R R/sub_iphc_design.R R/utils-pipe.R R/utils.R README.md

gfsynopsis.Rproj

inst/2018-01-28-EK-meeting-notes.md inst/2018-01-28-notes.md inst/TEMP-make.R inst/cache-data.R inst/design-based-spatial-autocorrelation-test.R

inst/extdata/all-advisory-2018-10-16.xlsx

inst/extdata/resdocs-2018-10-16.xlsx

inst/extdata/sar-2018-10-16.xlsx

inst/extdata/spp-of-interest.csv

inst/extdata/spp-refs.txt

inst/extdata/sr-2018-10-16.xlsx

inst/extdata/ssr-2018-10-16.xlsx

inst/extdata/survey-refs.txt

inst/fit_cpue_index.R inst/gabe.R inst/get-ranges.R inst/goa-clim.R inst/jim.R inst/lingcod.R inst/lingcod.Rmd inst/longspine-mcp.R inst/make-spatial-cpue-tom.R inst/mssm.R inst/png.R inst/png2.R inst/presentation-2018-03-11.R inst/requests/ambre.R inst/requests/gwaiihaanas.R inst/requests/hbll-inside.R inst/requests/skates.R inst/requests/trevor.R inst/rsr.R inst/steve-map-dat.R inst/sub-data.R inst/substitute-cached-data.R inst/tac.R inst/uncompress.R inst/yellowmouth.R

makefile

man/add_upr.Rd man/central_diff.Rd man/choose_survey_grid.Rd man/clean_name.Rd man/fit_cpue_indices.Rd man/fit_sdmTMB_westcoast.Rd man/fit_survey_maps.Rd man/format_final_year_for_map_iphc.Rd man/fourth_root_power_trans.Rd man/get_data.Rd man/get_data_iphc.Rd man/get_data_iphc_hook_with_bait.Rd man/get_fderiv.Rd man/get_inclusion_table.Rd man/get_iphc_hook_data.Rd man/get_iphc_pos_sets.Rd man/get_iphc_stitched_index.Rd man/get_ll_bait_counts.Rd man/get_pstar.Rd man/get_spp_names.Rd man/get_stitch_lu.Rd man/get_stitched_index.Rd man/gfsynopsis.Rd man/gg_color_hue.Rd man/make_pages.Rd man/pipe.Rd man/plot_catches.Rd man/plot_cpue_indices.Rd man/plot_cpue_spaghetti.Rd man/plot_pstar.Rd man/plot_survey_maps.Rd man/prep_iphc_stitch_dat.Rd man/prep_mssm_dat.Rd man/prep_stitch_dat.Rd man/prep_stitch_grids.Rd man/rougheye_split.Rd

paper/.gitignore

paper/Highlights.txt

paper/american-fisheries-society.csl

paper/article.tex

paper/benefits-table.csv

paper/cfjas.csl

paper/compile.R

paper/elsevier-harvard.csl

paper/extract-pages.R

paper/fig1-pcod-no-sar.png

paper/fig1.graffle

paper/fisheries.csl

paper/journals.md

paper/makefile

paper/notes.Rmd paper/number-paragraphs.R

paper/paper-preprint.tex

paper/paper-subm-fisheries.tex

paper/paper.Rmd paper/pices-abstract.md

paper/refs.bib

paper/vec-figs.R

report/2019-resdoc-survey-years.csv

report/4B.Rmd

report/COSEWIC-species-old.csv

report/COSEWIC-species.csv

report/check-rw.R report/cpois-lingcod.R

report/csas-filtered.csv

report/length-axis-ticks.csv

report/make-geostat.R report/make-geostat2.R report/make-one-species.R report/make.R report/mssm-compare.R

report/mssm-tech-report/.gitignore

report/mssm-tech-report/_bookdown.yml

report/mssm-tech-report/bib/mssm.bib

report/mssm-tech-report/csl/csas-french.csl

report/mssm-tech-report/csl/csas.csl

report/mssm-tech-report/data/SMMS-grid/SMMS_Survey_Blocks.cpg

report/mssm-tech-report/data/SMMS-grid/SMMS_Survey_Blocks.dbf

report/mssm-tech-report/data/SMMS-grid/SMMS_Survey_Blocks.prj

report/mssm-tech-report/data/SMMS-grid/SMMS_Survey_Blocks.qmd

report/mssm-tech-report/data/SMMS-grid/SMMS_Survey_Blocks.shp

report/mssm-tech-report/data/SMMS-grid/SMMS_Survey_Blocks.shx

report/mssm-tech-report/data/higher-taxonomic-mssm-spp.rds

report/mssm-tech-report/data/mssm-survey-changes.csv

report/mssm-tech-report/index.Rmd

report/mssm-tech-report/index.tex

report/mssm-tech-report/tech-report-cover.docx

report/mssm-tech-report/tech-report-cover.pdf

report/other-surveys.csv

report/plot-indices.R

report/presentations/iphc-survey/iphc-survey.Rnw

report/refs.R

report/report-rmd-fr-2021/.gitignore

report/report-rmd-fr-2021/_bookdown.yml

report/report-rmd-fr-2021/bib/spp-refs.bib

report/report-rmd-fr-2021/bib/survey-refs.bib

report/report-rmd-fr-2021/bib/synopsis.bib

report/report-rmd-fr-2021/csas-style/sr-french.sty

report/report-rmd-fr-2021/csl/csas-french.csl

report/report-rmd-fr-2021/csl/csas.csl

report/report-rmd-fr-2021/figure/3CD5ABCDE-fr.png

report/report-rmd-fr-2021/figure/readme.md report/report-rmd-fr-2021/index.Rmd report/report-rmd-fr-2021/intro-maps.R

report/report-rmd-fr-2021/makefile

report/report-rmd-fr-2021/plot-pages.Rmd

report/report-rmd-fr-2021/tables/sample-source.csv

report/report-rmd-fr-2021/tables/spp-category.csv

report/report-rmd-fr-2021/tables/sql-comm-samp.csv

report/report-rmd-fr/_bookdown.yml

report/report-rmd-fr/bib/spp-refs-backup.bib

report/report-rmd-fr/bib/spp-refs.bib

report/report-rmd-fr/bib/survey-refs.bib

report/report-rmd-fr/bib/synopsis.bib

report/report-rmd-fr/csl/csas.csl

report/report-rmd-fr/figure/temp2/notscaled.png

report/report-rmd-fr/figure/temp2/rescaled.png

report/report-rmd-fr/index.Rmd

report/report-rmd-fr/makefile

report/report-rmd/.gitignore

report/report-rmd/_bookdown.yml

report/report-rmd/bib/spp-refs.bib

report/report-rmd/bib/survey-refs.bib

report/report-rmd/bib/synopsis.bib

report/report-rmd/csl/csas.csl

report/report-rmd/figure/3CD5ABCDE.png

report/report-rmd/figure/fishery-closures.png

report/report-rmd/figure/function-web.pdf

report/report-rmd/figure/function-web.png

report/report-rmd/figure/readme.md

report/report-rmd/figure/temp2/notscaled.png

report/report-rmd/figure/temp2/rescaled.png

report/report-rmd/index.Rmd report/report-rmd/intro-maps.R

report/report-rmd/labels_for_translation.txt

report/report-rmd/makefile

report/report-rmd/plot-pages.Rmd

report/report-rmd/tables/sample-source.csv

report/report-rmd/tables/spp-category.csv

report/report-rmd/tables/sql-comm-samp.csv

report/report-rmd/templates/RES2016-eng-titlepage.docx

report/run-stitching.R

report/silvergray.jpg

report/spp-refs.csv

report/survey-refs.csv

report/synoptic-compare.R

report/tech-report/.gitignore

report/tech-report/01-introduction.Rmd report/tech-report/02-plot-descriptions.Rmd report/tech-report/04-indices.Rmd report/tech-report/05-synopsis-plots-intro.Rmd report/tech-report/90-appendix-start.Rmd report/tech-report/98-iphc-appendix.Rmd report/tech-report/98-stitching-appendix.Rmd report/tech-report/99-bibliography.Rmd report/tech-report/999-appendix-end.Rmd

report/tech-report/_bookdown.yml

report/tech-report/_bookdown_a93a611cf21c.yml

report/tech-report/bib/spp-refs.bib

report/tech-report/bib/survey-refs.bib

report/tech-report/bib/synopsis.bib

report/tech-report/csas-style/tech-report.sty

report/tech-report/csl/csas-french.csl

report/tech-report/csl/csas.csl

report/tech-report/figure/3CD5ABCDE.png

report/tech-report/figure/fishery-closures.png

report/tech-report/index.Rmd report/tech-report/intro-maps.R report/tech-report/plot-pages.Rmd report/tech-report/tech-report-cover.pdf

report/tech-report/templates/tech-report-cover-eng.docx

report/test-cpoisson.R

pbs-assess/gfsynopsis documentation built on March 26, 2024, 7:30 p.m.

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pbs-assess/gfsynopsis
Data Synopsis Reports for PBS Groundfish

Files in pbs-assess/gfsynopsis
Data Synopsis Reports for PBS Groundfish

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pbs-assess/gfsynopsis Data Synopsis Reports for PBS Groundfish

Files in pbs-assess/gfsynopsis Data Synopsis Reports for PBS Groundfish

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pbs-assess/gfsynopsis
Data Synopsis Reports for PBS Groundfish

Files in pbs-assess/gfsynopsis
Data Synopsis Reports for PBS Groundfish