plot_survey_maps: Plot survey maps
In pbs-assess/gfsynopsis: Data Synopsis Reports for PBS Groundfish

plot_survey_maps

R Documentation

Plot survey maps

Description

plot_survey_maps() is a helper function that calls gfplot::plot_survey_sets() appropriately for the various surveys.

Usage

plot_survey_maps(
  pred_dat,
  raw_dat,
  show_axes = FALSE,
  show_raw_data = TRUE,
  pos_pt_col = "#FFFFFF60",
  bin_pt_col = "#FFFFFF40",
  pos_pt_fill = "#FFFFFF05",
  north_symbol = FALSE,
  fill_column = "combined",
  trans = "sqrt",
  show_model_predictions = TRUE,
  annotations = c("SYN", "IPHC", "HBLL"),
  syn_qcs_hs_year = 2019,
  syn_wcvi_year = 2018,
  syn_wchg_year = 2018,
  hbll_n_year = 2017,
  hbll_s_year = 2018,
  iphc_year = 2018,
  ...
)

Arguments

`pred_dat`	The `pred_dat` element from `fit_survey_maps()`.
`raw_dat`	The `raw_dat` element from `fit_survey_maps()`.
`show_axes`	Logical for whether or not to show axes.
`show_raw_data`	Logical for whether or not show the raw data.
`pos_pt_col`	The colour for the positive points.
`bin_pt_col`	The colour for the occurrence/binary points.
`pos_pt_fill`	The fill colour for the positive points.
`north_symbol`	Logical for whether or not to include the North symbol.
`fill_column`	A character object describing the fill column name.
`trans`	The transformation function to apply to the color scale. Passed to `viridis::scale_fill_viridis()`.
`show_model_predictions`	Logical for whether or not to show the model predictions.
`annotations`	A character object describing which annotations to include. These annotations include the relevent years on the map.
`syn_qcs_hs_year`	Year for a synoptic survey label.
`syn_wcvi_year`	Year for WCVI synoptic survey label.
`syn_wchg_year`	Year for WCHG synoptic survey label.
`hbll_n_year`	Year for a HBLL N survey label.
`hbll_s_year`	Year for a HBLL S survey label.
`iphc_year`	Year for IPHC survey label.
`...`	Any other arguments to pass to `gfplot::plot_survey_sets()`.