fit_survey_maps: Fit geostatistical survey models and make maps

In pbs-assess/gfsynopsis: Data Synopsis Reports for PBS Groundfish

Fit geostatistical survey models and make maps

Description

fit_survey_maps() is a helper function that calls gfplot::fit_survey_sets() appropriately for the various surveys.

Usage

fit_survey_maps(
  dat,
  species = "pacific cod",
  include_depth = TRUE,
  family = sdmTMB::tweedie(),
  surveys = c("SYN QCS", "SYN HS", "SYN WCHG", "SYN WCVI"),
  years = c(2017, 2018),
  ...
)

Arguments

dat	Data from gfdata::get_survey_sets().
species	The species name.
include_depth	Logical for whether or not to include depth and depth squared as predictors.
family	Family
surveys	Character vector describing the surveys to fit. Can include multiple surveys if desired.
years	The years of survey data to use.
...	Any other arguments to pass to gfplot::fit_survey_sets().
model	Whether to fit an INLA or glmmfields model.

pbs-assess/gfsynopsis documentation built on March 26, 2024, 7:30 p.m.