Global functions | |
---|---|
.has_delta_attr | Source code |
.onLoad | Source code |
.onUnload | Source code |
.one_sample_posterior | Source code |
Beta | Man page Source code |
Effect.sdmTMB | Man page Source code |
Families | Man page |
add_barrier_mesh | Man page Source code |
add_to_family | Source code |
add_utm_columns | Man page Source code |
binary_search_knots | Source code |
censored_poisson | Man page Source code |
check_and_parse_thresh_params | Source code |
check_bounds | Source code |
check_for_H | Source code |
check_irregalar_time | Source code |
check_model_arg | Source code |
check_offset | Source code |
check_overdisp | Source code |
check_sdmTMB_version | Source code |
check_spatiotemporal_arg | Source code |
check_time_class | Source code |
check_valid_factor_levels | Source code |
check_visreg | Source code |
chunk_time | Source code |
coef.sdmTMB | Man page Source code |
confint.sdmTMB | Source code |
delta_beta | Man page Source code |
delta_gamma | Man page Source code |
delta_gamma_mix | Man page Source code |
delta_gengamma | Man page Source code |
delta_lognormal | Man page Source code |
delta_lognormal_mix | Man page Source code |
delta_poisson_link_gamma | Man page Source code |
delta_poisson_link_lognormal | Man page Source code |
delta_truncated_nbinom1 | Man page Source code |
delta_truncated_nbinom2 | Man page Source code |
df.residual.sdmTMB | Source code |
dharma_residuals | Man page Source code |
dnbinom1 | Source code |
dogfish | Man page |
dstudent | Source code |
emm_basis.sdmTMB | Source code |
emmeans.sdmTMB | Man page |
expand_time | Source code |
extractAIC.sdmTMB | Source code |
extract_mcmc | Man page Source code |
find_missing_time | Source code |
fitted.sdmTMB | Source code |
fixef.sdmTMB | Source code |
gamma_mix | Man page Source code |
gather_sims | Man page Source code |
gengamma | Man page Source code |
get_censored_upper | Source code |
get_cog | Man page Source code |
get_convergence_diagnostics | Source code |
get_crs | Man page Source code |
get_eao | Man page Source code |
get_fitted_time | Source code |
get_generic | Source code |
get_index | Man page Source code |
get_index_sims | Man page Source code |
get_kappa_map | Source code |
get_pars | Man page Source code |
get_response | Source code |
get_scale_factor | Source code |
get_smooth_terms | Source code |
get_spde_matrices | Source code |
ggplot2_installed | Man page Source code |
halfnormal | Man page Source code |
has_no_random_effects | Source code |
hbll_s_grid | Man page |
inla_docs_log | Source code |
insert_pars | Source code |
is_delta | Source code |
ll_binomial | Source code |
ll_gamma | Source code |
ll_gaussian | Source code |
ll_lognormal | Source code |
ll_nbinom1 | Source code |
ll_nbinom2 | Source code |
ll_sdmTMB | Source code |
ll_student | Source code |
ll_tweedie | Source code |
log1mexp | Source code |
logLik.sdmTMB | Source code |
log_sum_exp | Source code |
lognormal | Man page Source code |
lognormal_mix | Man page Source code |
make_anisotropy_spde | Source code |
make_barrier_spde | Source code |
make_mesh | Man page Source code |
make_time_lu | Source code |
make_year_i | Source code |
map_all_params | Source code |
map_kappa | Source code |
model.frame.sdmTMB | Source code |
move_proj_to_tmbdat | Source code |
mround | Source code |
mvnormal | Man page Source code |
named_list | Source code |
nbinom1 | Man page Source code |
nbinom2 | Man page Source code |
nbinom2_mix | Man page Source code |
nobs.sdmTMB | Source code |
normal | Man page Source code |
par_df | Source code |
par_message | Source code |
parse_smoothers | Source code |
parse_spatial_arg | Source code |
parse_threshold_formula | Source code |
pc_matern | Man page Source code |
pcod | Man page |
pcod_2011 | Man page |
pcod_mesh_2011 | Man page |
pgengamma | Source code |
plot.sdmTMBmesh | Man page Source code |
plot_anisotropy | Man page Source code |
plot_anisotropy2 | Man page Source code |
plot_pc_matern | Man page Source code |
plot_smooth | Man page Source code |
pnbinom1 | Source code |
predict.sdmTMB | Man page Source code |
print.sdmTMB | Source code |
print.sdmTMB_cv | Source code |
print_anisotropy | Source code |
print_footer | Source code |
print_header | Source code |
print_iid_re | Source code |
print_main_effects | Source code |
print_model_info | Source code |
print_one_model | Source code |
print_other_parameters | Source code |
print_range | Source code |
print_smooth_effects | Source code |
print_time_varying | Source code |
project | Man page Source code |
pt_ls | Source code |
qcs_grid | Man page |
qnbinom1 | Source code |
qres_beta | Source code |
qres_binomial | Source code |
qres_gamma | Source code |
qres_gamma_mix | Source code |
qres_gaussian | Source code |
qres_gengamma | Source code |
qres_lognormal | Source code |
qres_lognormal_mix | Source code |
qres_nbinom1 | Source code |
qres_nbinom2 | Source code |
qres_nbinom2_mix | Source code |
qres_pois | Source code |
qres_student | Source code |
qres_tweedie | Source code |
ranef.sdmTMB | Source code |
recover_data.sdmTMB | Source code |
reexports | Man page |
reinitialize | Source code |
reload_model | Source code |
remove_9000 | Source code |
remove_s_and_t2 | Source code |
replicate_df | Man page Source code |
residuals.sdmTMB | Man page Source code |
rmvnorm_prec | Source code |
rnbinom1 | Source code |
run_extra_optimization | Man page Source code |
s2rPred | Source code |
sanity | Man page Source code |
sdmTMB | Man page Source code |
sdmTMB_cv | Man page Source code |
sdmTMB_simulate | Man page Source code |
sdmTMB_stacking | Man page Source code |
sdmTMBcontrol | Man page Source code |
sdmTMBpriors | Man page Source code |
set_delta_model | Man page Source code |
set_limits | Source code |
set_par_value | Source code |
simulate.sdmTMB | Man page Source code |
split_form | Source code |
spread_sims | Man page Source code |
student | Man page Source code |
summary.sdmTMB | Source code |
terms.sdmTMB | Source code |
tidy | Man page |
tidy.sdmTMB | Man page Source code |
tidy_sigma_G_priors | Source code |
truncated_nbinom1 | Man page Source code |
truncated_nbinom2 | Man page Source code |
tweedie | Man page Source code |
unmap | Source code |
vcov.sdmTMB | Source code |
visreg2d_delta | Man page Source code |
visreg_delta | Man page Source code |
wcvi_grid | Man page |
yelloweye | Man page |
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