API for pbs-assess/sdmTMB
Spatial and Spatiotemporal SPDE-Based GLMMs with 'TMB'

Global functions
.has_delta_attr Source code
.onLoad Source code
.onUnload Source code
.one_sample_posterior Source code
Beta Man page Source code
Effect.sdmTMB Man page Source code
Families Man page
add_barrier_mesh Man page Source code
add_to_family Source code
add_utm_columns Man page Source code
binary_search_knots Source code
censored_poisson Man page Source code
check_and_parse_thresh_params Source code
check_bounds Source code
check_for_H Source code
check_irregalar_time Source code
check_model_arg Source code
check_offset Source code
check_overdisp Source code
check_sdmTMB_version Source code
check_spatiotemporal_arg Source code
check_time_class Source code
check_valid_factor_levels Source code
check_visreg Source code
chunk_time Source code
coef.sdmTMB Man page Source code
confint.sdmTMB Source code
delta_beta Man page Source code
delta_gamma Man page Source code
delta_gamma_mix Man page Source code
delta_gengamma Man page Source code
delta_lognormal Man page Source code
delta_lognormal_mix Man page Source code
delta_poisson_link_gamma Man page Source code
delta_poisson_link_lognormal Man page Source code
delta_truncated_nbinom1 Man page Source code
delta_truncated_nbinom2 Man page Source code
df.residual.sdmTMB Source code
dharma_residuals Man page Source code
dnbinom1 Source code
dogfish Man page
dstudent Source code
emm_basis.sdmTMB Source code
emmeans.sdmTMB Man page
expand_time Source code
extractAIC.sdmTMB Source code
extract_mcmc Man page Source code
find_missing_time Source code
fitted.sdmTMB Source code
fixef.sdmTMB Source code
gamma_mix Man page Source code
gather_sims Man page Source code
gengamma Man page Source code
get_censored_upper Source code
get_cog Man page Source code
get_convergence_diagnostics Source code
get_crs Man page Source code
get_eao Man page Source code
get_fitted_time Source code
get_generic Source code
get_index Man page Source code
get_index_sims Man page Source code
get_kappa_map Source code
get_pars Man page Source code
get_response Source code
get_scale_factor Source code
get_smooth_terms Source code
get_spde_matrices Source code
ggplot2_installed Man page Source code
halfnormal Man page Source code
has_no_random_effects Source code
hbll_s_grid Man page
inla_docs_log Source code
insert_pars Source code
is_delta Source code
ll_binomial Source code
ll_gamma Source code
ll_gaussian Source code
ll_lognormal Source code
ll_nbinom1 Source code
ll_nbinom2 Source code
ll_sdmTMB Source code
ll_student Source code
ll_tweedie Source code
log1mexp Source code
logLik.sdmTMB Source code
log_sum_exp Source code
lognormal Man page Source code
lognormal_mix Man page Source code
make_anisotropy_spde Source code
make_barrier_spde Source code
make_mesh Man page Source code
make_time_lu Source code
make_year_i Source code
map_all_params Source code
map_kappa Source code
model.frame.sdmTMB Source code
move_proj_to_tmbdat Source code
mround Source code
mvnormal Man page Source code
named_list Source code
nbinom1 Man page Source code
nbinom2 Man page Source code
nbinom2_mix Man page Source code
nobs.sdmTMB Source code
normal Man page Source code
par_df Source code
par_message Source code
parse_smoothers Source code
parse_spatial_arg Source code
parse_threshold_formula Source code
pc_matern Man page Source code
pcod Man page
pcod_2011 Man page
pcod_mesh_2011 Man page
pgengamma Source code
plot.sdmTMBmesh Man page Source code
plot_anisotropy Man page Source code
plot_anisotropy2 Man page Source code
plot_pc_matern Man page Source code
plot_smooth Man page Source code
pnbinom1 Source code
predict.sdmTMB Man page Source code
print.sdmTMB Source code
print.sdmTMB_cv Source code
print_anisotropy Source code
print_footer Source code
print_header Source code
print_iid_re Source code
print_main_effects Source code
print_model_info Source code
print_one_model Source code
print_other_parameters Source code
print_range Source code
print_smooth_effects Source code
print_time_varying Source code
project Man page Source code
pt_ls Source code
qcs_grid Man page
qnbinom1 Source code
qres_beta Source code
qres_binomial Source code
qres_gamma Source code
qres_gamma_mix Source code
qres_gaussian Source code
qres_gengamma Source code
qres_lognormal Source code
qres_lognormal_mix Source code
qres_nbinom1 Source code
qres_nbinom2 Source code
qres_nbinom2_mix Source code
qres_pois Source code
qres_student Source code
qres_tweedie Source code
ranef.sdmTMB Source code
recover_data.sdmTMB Source code
reexports Man page
reinitialize Source code
reload_model Source code
remove_9000 Source code
remove_s_and_t2 Source code
replicate_df Man page Source code
residuals.sdmTMB Man page Source code
rmvnorm_prec Source code
rnbinom1 Source code
run_extra_optimization Man page Source code
s2rPred Source code
sanity Man page Source code
sdmTMB Man page Source code
sdmTMB_cv Man page Source code
sdmTMB_simulate Man page Source code
sdmTMB_stacking Man page Source code
sdmTMBcontrol Man page Source code
sdmTMBpriors Man page Source code
set_delta_model Man page Source code
set_limits Source code
set_par_value Source code
simulate.sdmTMB Man page Source code
split_form Source code
spread_sims Man page Source code
student Man page Source code
summary.sdmTMB Source code
terms.sdmTMB Source code
tidy Man page
tidy.sdmTMB Man page Source code
tidy_sigma_G_priors Source code
truncated_nbinom1 Man page Source code
truncated_nbinom2 Man page Source code
tweedie Man page Source code
unmap Source code
vcov.sdmTMB Source code
visreg2d_delta Man page Source code
visreg_delta Man page Source code
wcvi_grid Man page
yelloweye Man page
pbs-assess/sdmTMB documentation built on Nov. 30, 2024, 1:10 a.m.