Files in pengminshi/cFIT

cFIT (common Factor Space Integration & Transfer)

LICENSE.md R/data_integration.R R/data_integration_sketched.R R/data_preprocessing_utils.R R/data_transfer.R R/evaluation_metrics.R R/logger.R R/plot_utils.R R/simulation_by_model.R README.md man/CFITIntegrate.Rd man/CFITIntegrate_sketched.Rd man/CFITTransfer.Rd man/ari.Rd man/asign_labels.Rd man/calculate_alignment.Rd man/calculate_alignment_per_type.Rd man/generate_centers_uniform.Rd man/generate_data.Rd man/get_cluster_match.Rd man/getmode.Rd man/gg_color_hue.Rd man/human_gene_to_mouse_genes.Rd man/initialize_params.Rd man/initialize_params_random.Rd man/label_to_membership.Rd man/log_to_both.Rd man/log_to_console.Rd man/log_to_file.Rd man/logmsg.Rd man/match_human_expr_to_mouse_genes.Rd man/match_mouse_expr_to_human_genes.Rd man/mouse_gene_to_human_genes.Rd man/objective_func.Rd man/plotContTable.Rd man/plot_umap.Rd man/preprocess_for_integration.Rd man/preprocess_for_transfer.Rd man/select_genes.Rd man/set_log_level.Rd man/solve_H.Rd man/solve_W.Rd man/solve_W_penalized.Rd man/solve_b.Rd man/solve_b_penalized.Rd man/solve_lambda_list.Rd man/solve_lambda_list_penalized.Rd man/solve_subproblem.Rd man/solve_subproblem_penalized.Rd man/split_dataset_by_batch.Rd man/statistical_leverage_score.Rd man/step_size.Rd man/subsample.Rd man/transfer_objective_func.Rd man/transfer_solve_lambda.Rd man/transfer_solve_subproblem.Rd realdata/human_brain_data_integration.R realdata/human_brain_data_transfer.R tests/testthat.R tests/testthat/test-data_integration.R tests/testthat/test-data_integration_sketched.R tests/testthat/test-data_transfer.R vignettes/vignette.Rmd