split_dataset_by_batch: Split the expression matrix into a list of per batch...

In pengminshi/cFIT: cFIT (common Factor Space Integration & Transfer)

Description

Split the expression matrix into a list of per batch expressions

Usage

split_dataset_by_batch(
  X,
  batch,
  labels = NULL,
  metadata = NULL,
  dataset.name = NULL
)

Arguments

X	An ncells-by-ngenes gene expression matrix
batch	categorical/characteristic vector as batch id
labels	(optional) charateristic vector of cell labels (default NULL)
metadata	(optinal) dataframe of ncells row saving the cell metadata
dataset.name	string, prefix of list name

Value

a list containing

X.list

a list of gene expression matrix per batch

labels.list

a list of vectors, saving the cell labels per batch

metadata.list

a list of dataframe saving the metadata per batch

pengminshi/cFIT documentation built on July 11, 2021, 11:12 p.m.