solve_b_penalized: Solve for dataset specific shift b with Stochastic Porximal...

In pengminshi/cFIT: cFIT (common Factor Space Integration & Transfer)

Description

Solve for dataset specific shift b with Stochastic Porximal Point method

Usage

solve_b_penalized(X, W, H, lambd, b.old, iter, b.gamma = 0.1)

Arguments

X	ncells-by-ngenes gene expression matrix
W	ngenes-by-r non-negative common factor matrix
H	ncells-by-r nonnegative factor loading matrix
lambd	numeric scalar, scaling associated with the dataset
b.old	b vector from last iteration
iter	current iteration, for calculating the step size.
b.gamma	tunning parameter for the L2 panelty on b.gamma.

Value

b shift vector of size p (ngenes).

pengminshi/cFIT documentation built on July 11, 2021, 11:12 p.m.