asign_labels: Assign labels for each cell in for target data given the...

In pengminshi/cFIT: cFIT (common Factor Space Integration & Transfer)

Description

Assign labels to each cell by the mode of neighboring reference cell types

Usage

asign_labels(
  exprs.source,
  exprs.target,
  labels.source,
  k = NULL,
  max.k = 50,
  verbose = F
)

Arguments

exprs.source	ncells-by-ngenes expression matrix of source data
exprs.target	ncells-by-ngenes expression matrix of target data
labels.source	a vector of labels for source cells
k	integer, number of nearest neighor (by default min(max.k, max(10, floor(0.01* (n.source + n.target)))) is used)
max.k	upper bound of k (default 50)
verbose	boolean scalar, whether to show extensive program logs (default TRUE)

pengminshi/cFIT documentation built on July 11, 2021, 11:12 p.m.