Man pages for phylotastic/rphylotastic
An R Interface to 'Phylotastic' Web Services
| arclabels | Add arc labels to tips of a phylogeny; works for... |
| file_get_scientific_names | Function to pull scientific names from file |
| file_get_scientific_names_from_GNRD | Function to pull scientific names from file using GNRD |
| flower_plant_fams | Flowering plants families from Open Tree Taxonomy |
| get_base_url | Get Phylotastic base URL return The URL for the phylotastic... |
| get_list_server_url | Return Species List server URL |
| get_species_from_list | Get existing list/lists of species |
| insert_species_in_list | Insert list of species |
| remove_species_from_list | Remove an existing list of species |
| replace_species_in_list | Replace a list of species |
| rphylotastic-package | rphylotastic: An R Interface to 'Phylotastic' Web Services |
| species_get_image_data | Get image metadata of a list of species |
| species_get_info | Get information from Encyclopedia of Life of a list of... |
| taxa_common_to_scientific | Convert common names to scientific names. |
| taxa_get_otol_tree | Get OToL induced subtree |
| taxa_get_phylomatic_tree | Get phylomatic subtree |
| taxa_resolve_names_with_gnr | Resolve Scientific Names with GNR TNRS |
| taxa_resolve_names_with_otol | Resolve Scientific Names with Open Tree TNRS |
| taxa_toss_binomials | Keep the first part of the binomial from a vector of taxon... |
| taxon_get_species | Get all species from a taxon from Open Tree of Life taxonomy. |
| taxon_get_species_from_country | Get all species filtered by country from a taxon |
| taxon_get_species_with_genome | Get all species that have genome sequence in NCBI from a... |
| taxon_separate_dark_taxa_using_genbank | Separate dark from known taxa on another database |
| taxon_separate_dark_taxa_using_otol | Separate dark from known taxa on OpenTree of Life |
| terrestrial_plant_orders | Flowering plants families from Open Tree Taxonomy |
| text_get_scientific_names | Function to pull scientific names from text |
| traits_get_tree | Function to get tree for a traits set. |
| update_species_in_list | Update metadata of a list of species |
| url_get_scientific_names | Function to pull scientific names from web pages |
