arclabels: Add arc labels to tips of a phylogeny; works for...

In phylotastic/rphylotastic: An R Interface to 'Phylotastic' Web Services

Add arc labels to tips of a phylogeny; works for non-monophyletic groups and single tip lineages.

Description

Add arc labels to tips of a phylogeny; works for non-monophyletic groups and single tip lineages.

Usage

arclabels(phy, tips, ...)

## Default S3 method:
arclabels(
  phy = NULL,
  tips,
  text,
  plot_singletons = TRUE,
  ln.offset = 1.02,
  lab.offset = 1.06,
  cex = 1,
  orientation = "horizontal",
  ...
)

Arguments

phy	An object of class phylo.
tips	A character vector (or a list ?) with the names of the tips that belong to the clade or group. If multiple groups are going to be plotted, tips must be given in the form of a list.
...	optional arguments for arc.cladelabels.
text	A character vector indicating the desired text to label the arcs.
plot_singletons	Boolean. If TRUE (default), it will add arcs (and labels) to single tip lineages too. If FALSE, no arc or labels will be plotted over that tip..
ln.offset	line offset (as a function of total tree height) for arc.cladelabels.
lab.offset	label offset for arc.cladelabels.
cex	character expansion factor.
orientation	orientation of the text. Can be orientation = "vertical" (the default) or "horizontal".

Value

NULL

phylotastic/rphylotastic documentation built on Aug. 22, 2023, 9:51 p.m.