Man pages for phylotastic/rphylotastic
An R Interface to 'Phylotastic' Web Services

arclabelsAdd arc labels to tips of a phylogeny; works for...
file_get_scientific_namesFunction to pull scientific names from file
flower_plant_famsFlowering plants families from Open Tree Taxonomy
get_base_urlGet Phylotastic base URL return The URL for the phylotastic...
get_list_server_urlReturn Species List server URL
get_species_from_listGet existing list/lists of species
insert_species_in_listInsert list of species
phylo_compareCompare two phylogenetic trees
remove_species_from_listRemove an existing list of species
replace_species_in_listReplace a list of species
rphylotastic-packagerphylotastic: An R Interface to 'Phylotastic' Web Services
species_get_image_dataGet image metadata of a list of species
species_get_infoGet information from Encyclopedia of Life of a list of...
taxa_common_to_scientificConvert common names to scientific names.
taxa_get_otol_treeGet OToL induced subtree
taxa_get_phylomatic_treeGet phylomatic subtree
taxa_resolve_names_with_gnrResolve Scientific Names with GNR TNRS
taxa_resolve_names_with_otolResolve Scientific Names with Open Tree TNRS
taxa_toss_binomialsKeep the first part of the binomial from a vector of taxon...
taxon_get_speciesGet all species from a taxon from Open Tree of Life taxonomy.
taxon_get_species_from_countryGet all species filtered by country from a taxon
taxon_get_species_with_genomeGet all species that have genome sequence in NCBI from a...
taxon_separate_dark_taxa_using_genbankSeparate dark from known taxa on another database
taxon_separate_dark_taxa_using_otolSeparate dark from known taxa on OpenTree of Life
terrestrial_plant_ordersFlowering plants families from Open Tree Taxonomy
text_get_scientific_namesFunction to pull scientific names from text
traits_get_treeFunction to get tree for a traits set.
update_species_in_listUpdate metadata of a list of species
url_get_scientific_namesFunction to pull scientific names from web pages
phylotastic/rphylotastic documentation built on May 25, 2019, 6:04 a.m.