taxon_get_species_with_genome: Get all species that have genome sequence in NCBI from a...
In phylotastic/rphylotastic: An R Interface to 'Phylotastic' Web Services
taxon_get_species_with_genome R Documentation
Get all species that have genome sequence in NCBI from a taxon
Description
Get all species that have genome sequence in NCBI from a taxon
Usage
taxon_get_species_with_genome(
taxon,
filters = c("environmental", "sp\\.", "cf\\.")
)
Arguments
taxon
A character vector of length 1. Specify the taxon name to get a subset of species having genome sequence
filters
A character vector of strings to exclude
Value
A vector of names
See Also
https://github.com/phylotastic/phylo_services_docs/tree/master/ServiceDescription or the rotl package, another interface to Open Tree of Life
phylotastic/rphylotastic documentation built on Aug. 22, 2023, 9:51 p.m.
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| taxon_get_species_with_genome | R Documentation |
Get all species that have genome sequence in NCBI from a taxon
Description
Get all species that have genome sequence in NCBI from a taxon
Usage
taxon_get_species_with_genome(
taxon,
filters = c("environmental", "sp\\.", "cf\\.")
)
Arguments
taxon |
A character vector of length 1. Specify the taxon name to get a subset of species having genome sequence |
filters |
A character vector of strings to exclude |
Value
A vector of names
See Also
https://github.com/phylotastic/phylo_services_docs/tree/master/ServiceDescription or the rotl package, another interface to Open Tree of Life
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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