taxon_separate_dark_taxa_using_otol: Separate dark from known taxa on OpenTree of Life

In phylotastic/rphylotastic: An R Interface to 'Phylotastic' Web Services

Separate dark from known taxa on OpenTree of Life

Description

Separate dark from known taxa on OpenTree of Life

Usage

taxon_separate_dark_taxa_using_otol(
  taxon,
  filters = c("environmental", "sp\\.", "cf\\.", "uncultured", "unidentified",
    " clone", " enrichment")
)

Arguments

taxon	A taxon to get all species for
filters	A character vector of strings to exclude

Value

A list containing a vector of dark names, a vector of known names, and fraction.dark

See Also

https://github.com/phylotastic/phylo_services_docs/tree/master/ServiceDescription or the rotl package, another interface to Open Tree of Life

phylotastic/rphylotastic documentation built on Aug. 22, 2023, 9:51 p.m.