taxon_separate_dark_taxa_using_genbank: Separate dark from known taxa on another database

In phylotastic/rphylotastic: An R Interface to 'Phylotastic' Web Services

Separate dark from known taxa on another database

Description

Separate dark from known taxa on another database

Usage

taxon_separate_dark_taxa_using_genbank(
  taxon,
  filters = c("environmental", "sp\\.", "cf\\.", "uncultured", "unidentified",
    " clone", " enrichment"),
  verbose = TRUE,
  sleep = 0
)

Arguments

taxon	A taxon to get all species for
filters	A character vector of strings to exclude
verbose	Update on how many are done
sleep	How many seconds to sleep between calls (on top of rentrez's defaults)

Value

A list containing a vector of dark names, a vector of known names, and fraction.dark

phylotastic/rphylotastic documentation built on Aug. 22, 2023, 9:51 p.m.