Man pages for piotr-ole/kmer
kmer counting package
| add_kmer_if_not_exists | Add k-mer to a 'hash map' if it does not exist |
| amino_acids | Amino acids |
| amino_letters | Amino acids letters |
| count_kmer_num | Count k-mers for numeric sequences (the size of k-mer should... |
| count_k_mers | Count kmers |
| count_kmers_helper | Count k-mers |
| count_kmers_larger_than_one | Count k-mers that containes more than one item |
| count_kmers_str | Count k-mers for string sequences (the size of k-mer should... |
| count_mers | Count all mers |
| count_unigrams | Count unigrams |
| create_kmer | Create k-mer |
| fill_encoded_int_vector | Encode sequence vector (replace items to numbers) |
| fill_items_coding_maps | Prepare encoding and decoding 'hash maps' for sequence items |
| generate_random_alphabet | Generate random alphabet |
| generate_random_seq | Generate random sequence |
| get_hash | Get hash of k-mer that is in a given sequence |
| get_hash_for_word | Get hash of a sequence |
| get_kmers | Get k-mers |
| get_total_size_of_kmer | Get the total size of k-mer |
| get_window_length | Get k-mer window length |
| is_kmer_allowed | Is k-mer allowed |
| kmer-package | A short title line describing what the package does |
| update_kmers | Update k-mers in a 'hash map' |
| update_kmers_with_alphabet | Update k-mers with alphabet |
