update_kmers_with_alphabet: Update k-mers with alphabet

Description Arguments

Description

Generates and add k-mers (based on the given alphabet) that do not exist in the hash map.

Arguments

kmers

hash map reference that stores k-mers (see update_kmers)

alphabet

integer vector representing encoded alphabet

currentKmer

integer vector representing the part of currently generated k-mer

k

integer representing the number of k-mer items

num2str

hash map representing the sequence encoding between integer and string

kmer_decorator

function that can add extra characters for string representation of k-mer (for presentation reasons)


piotr-ole/kmer documentation built on Nov. 14, 2019, 8:10 p.m.