update_kmers: Update k-mers in a 'hash map'

In piotr-ole/kmer: kmer counting package

Description

Update k-mers in a hash map

Arguments

kmers	a hash map reference representing the found k-mers (see details)
d	integer vector representing gaps in k-mer
s	integer vector representing an encoded sequence
kmer_hash	integer representing computed hash of k-mer
kmer_begin_index	integer representing the begin index of k-mer in s
num2str	hash map representing encoding of sequence items between integer and string
kmer_decorator	function that can add extra characters to string k-mer (for example position information)

Details

k-mers hashmap contains key-value pairs: key is an integer representing a hash of k-mer, whereas the value represents a pair: (k-mer string for presentation, number of k-mer occurrences)

piotr-ole/kmer documentation built on Nov. 14, 2019, 8:10 p.m.