Man pages for plbaldoni/mixNBHMM
Differential Peak Calling via Hidden Markov Model With Mixture of Negative Binomial Distributions

controlEMControl parameters of the EM algorithm from mixNBHMM
createOffsetCreate Offsets for Peak Calling
cutoffDEPRECATED, USE fdrControl INSTEAD!
ENCODEChIP-seq read counts of H3K36me3 of GM12878, H1-hESC, and...
fdrControlClassification of genomic windows given an FDR control...
hg19.blacklist.v2Blacklisted genomic regions for functional genomics analysis...
mixNBHMMThree-state HMM with mixture model for differential peak...
mixNBHMMDataSetFromBamCreate a mixNBHMMDataSet from a set of BAM files
mixZINBHMMThree-state HMM with mixture model for differential peak...
plotPeaksCreate a plot of ChIP read counts with called peaks and...
simulateHMMSimulate a hidden Markov model path (HMM)
summarizePeaksSummarize peak calls and optionally create a BED 6+3 file in...
plbaldoni/mixNBHMM documentation built on Dec. 7, 2019, 1:02 p.m.