hg19.blacklist.v2: Blacklisted genomic regions for functional genomics analysis...

In plbaldoni/mixNBHMM: Differential Peak Calling via Hidden Markov Model With Mixture of Negative Binomial Distributions

Description

Version 2 (06/28/2019) of the blacklisted genomc ranges from the reference genome hg19 obtained. These tracks were obtained from https://github.com/Boyle-Lab/Blacklist/tree/master/lists.

Usage

data(hg19.blacklist.v2)

Format

Ranges

Source

https://github.com/Boyle-Lab/Blacklist/tree/master/lists https://sites.google.com/site/anshulkundaje/projects/blacklists

References

Amemiya HM, Kundaje A, Boyle AP. The ENCODE blacklist: identification of problematic regions of the genome. Sci Rep. 2019 Dec; 9(1) 9354 DOI: 10.1038/s41598-019-45839-z ENCODE Project Consortium. An integrated encyclopedia of DNA elements in the human genome. Nature. 2012 Sep 6;489(7414):57-74. doi: 10.1038/nature11247.

Examples

data(hg19.blacklist.v2)
hg19.blacklist.v2

plbaldoni/mixNBHMM documentation built on Dec. 24, 2019, 1:31 p.m.