Description Usage Arguments Value Author(s) References Examples
'plotPeaks()' imports the output from 'mixNBHMM()' and plots the peak calls of a given genomic region. If the mixNBHMMDataSet contains the assay 'offset', reads will be normalized prior to plotting (e.g. counts/exp(offset)). Reads from replicates pertaining to the same condition are aggregated prior to plotting.
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object |
a mixNBHMMDataSet |
ranges |
a GRanges object with the genomic corrdinates to be plotted (e.g. |
type |
either 'viterbi' (default) or an FDR control threshold (e.g. 0.05) |
palette |
the color brewer palette to be used (default is 'Set1') |
A ggplot
Pedro L. Baldoni, pedrobaldoni@gmail.com
https://github.com/plbaldoni/mixNBHMM
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