API for plbaldoni/mixNBHMM
Differential Peak Calling via Hidden Markov Model With Mixture of Negative Binomial Distributions

Global functions
ENCODE Man page
HMM.LLmix2 Source code
HMM.LLmix2_Constr Source code
HMM.LLmix2_diffConstr Source code
HMM.chain Source code
HMM.enumerate Source code
HMM.mean Source code
HMM.mean_Constr Source code
HMM.mean_diffConstr Source code
HMM.mixprob2 Source code
HMM.mixprob2_Constr Source code
HMM.mixprob2_diffConstr Source code
HMM.prob Source code
Mode Source code
Q Source code
Viterbi Source code
ZIHMM.LLmix2_Constr Source code
ZIHMM.mixprob2_Constr Source code
agg Source code
check.prob Source code
classify Source code
controlEM Man page Source code
createOffset Man page Source code
cutoff Man page Source code
deriv.nb Source code
deriv.nb2_Constr Source code
deriv.zinb2_Constr Source code
dzinb Source code
fdrControl Man page Source code
generateHMM Source code
getBIC Source code
glm.nb Source code
glm.nb2 Source code
glm.nb2_Constr Source code
glm.zinb2_Constr Source code
hg19.blacklist.v2 Man page
hmm2_P1 Source code
hmm2_P2 Source code
hmm2_logB Source code
hmm2_logF Source code
hmm_P1 Source code
hmm_P2 Source code
hmm_logB Source code
hmm_logF Source code
inv.par Source code
mixNBHMM Man page Source code
mixNBHMMDataSetFromBam Man page Source code
mixZINBHMM Man page Source code
plotPeaks Man page Source code
simulateHMM Man page Source code
summarizePeaks Man page Source code
vecData Source code
plbaldoni/mixNBHMM documentation built on Dec. 7, 2019, 1:02 p.m.