Differential Peak Calling via Hidden Markov Model With Mixture of Negative Binomial Distributions

Global functions | |
---|---|

ENCODE | Man page |

HMM.LLmix2 | Source code |

HMM.LLmix2_Constr | Source code |

HMM.LLmix2_diffConstr | Source code |

HMM.chain | Source code |

HMM.enumerate | Source code |

HMM.mean | Source code |

HMM.mean_Constr | Source code |

HMM.mean_diffConstr | Source code |

HMM.mixprob2 | Source code |

HMM.mixprob2_Constr | Source code |

HMM.mixprob2_diffConstr | Source code |

HMM.prob | Source code |

Mode | Source code |

Q | Source code |

Viterbi | Source code |

ZIHMM.LLmix2_Constr | Source code |

ZIHMM.mixprob2_Constr | Source code |

agg | Source code |

check.prob | Source code |

classify | Source code |

controlEM | Man page Source code |

createOffset | Man page Source code |

cutoff | Man page Source code |

deriv.nb | Source code |

deriv.nb2_Constr | Source code |

deriv.zinb2_Constr | Source code |

dzinb | Source code |

fdrControl | Man page Source code |

generateHMM | Source code |

getBIC | Source code |

glm.nb | Source code |

glm.nb2 | Source code |

glm.nb2_Constr | Source code |

glm.zinb2_Constr | Source code |

hg19.blacklist.v2 | Man page |

hmm2_P1 | Source code |

hmm2_P2 | Source code |

hmm2_logB | Source code |

hmm2_logF | Source code |

hmm_P1 | Source code |

hmm_P2 | Source code |

hmm_logB | Source code |

hmm_logF | Source code |

inv.par | Source code |

mixNBHMM | Man page Source code |

mixNBHMMDataSetFromBam | Man page Source code |

mixZINBHMM | Man page Source code |

plotPeaks | Man page Source code |

simulateHMM | Man page Source code |

summarizePeaks | Man page Source code |

vecData | Source code |

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