Files in plevritis-lab/CELESTA
Cell type identification with spatial information
.Rbuildignore
.gitignore
CELESTA.Rproj
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
R/CELESTA_functions.R
README.Rmd
README.md
data/high_marker_threshold_anchor.rda
data/high_marker_threshold_iteration.rda
data/imaging_data.csv
data/imaging_data.rda
data/low_marker_threshold_anchor.rda
data/low_marker_threshold_iteration.rda
data/prior_marker_info.csv
data/prior_marker_info.rda
images/CD31_threshold.png
images/Cytokeratin_threshold.png
images/aSMA_threshold.png
images/demo_image.png
images/high_threshold_example.png
images/low_threshold_example.png
images/plot_cell_assignment.png
images/prior_matrix_example.png
images/segmented_file_example.png
man/AssignCellTypes.Rd
man/AssignCells.Rd
man/BuildSigmoidFunction.Rd
man/CalcMarkerActivationProbability.Rd
man/CalculateBeta.Rd
man/CalculateIndexCellProb.Rd
man/CalculateProbabilityDifference.Rd
man/CalculateScores.Rd
man/Celesta-class.Rd
man/CountCellType.Rd
man/CreateCelestaObject.Rd
man/FilterArtifactCells.Rd
man/FilterCells.Rd
man/FindCellsToCheck.Rd
man/FindCellsWithId.Rd
man/FitGmmModel.Rd
man/GetCoords.Rd
man/GetDistFromNearestAssignedCells.Rd
man/GetFinalInferredCellTypes.Rd
man/GetInitialPriorMatrix.Rd
man/GetMarkerExpMatrix.Rd
man/GetNeighborInfo.Rd
man/GetPriorInfo.Rd
man/GetScore.Rd
man/InitializeCellAndScoringMatrices.Rd
man/MarkQuestionableCells.Rd
man/NeighborCellType.Rd
man/PlotCellsAnyCombination.Rd
man/PlotExpProb.Rd
man/PlotSingleExpProb.Rd
man/UpdatePriorMatrix.Rd
man/figures/README-pressure-1.png
tests/CELESTA_functions_orig.R
tests/testthat.R
tests/testthat/project_title_anchor_cell_assignment.csv
tests/testthat/project_title_final_cell_type_assignment.csv
tests/testthat/test-CELESTA_functions.R
