CalculateIndexCellProb: CalculateIndexCellProb

In plevritis-lab/CELESTA: Cell type identification with spatial information

CalculateIndexCellProb

Description

Calculates the probability for index cells

Usage

CalculateIndexCellProb(
  current_cell_prob,
  current_cell_type_assignment,
  current_beta,
  nb_cell_type,
  current_scoring_matrix,
  cell_type_num,
  unassigned_cells,
  round
)

Arguments

current_cell_prob	the current cell probability (number_cells x number_cell_type)
current_cell_type_assignment	the current cell type assignments (number_cells x total_rounds)
current_beta	the current beta values
nb_cell_type	cell types of the neighboring cells for index cells
current_scoring_matrix	the current scoring matrix (number_cells x number_cell_type)
cell_type_num	the cell types associated with the current round
unassigned_cells	cells not assigned a cell type for each round and iteration
round	the current round

Value

calculates the probability for each cell type for unassigned cells

plevritis-lab/CELESTA documentation built on Jan. 30, 2023, 3:32 p.m.