CountCellType: CountCellType

In plevritis-lab/CELESTA: Cell type identification with spatial information

CountCellType

Description

Counts the cell type

Usage

CountCellType(prior_info, current_cell_type_assignment, cell_type_num, round)

Arguments

prior_info	user-defined cell-type signature matrix. The data should contain two columns (name X and Y) for the x, y coordinates and a column for each protein marker. Each row represents the data for a single cell, including its x, y coordinates and expression for each protein marker.
current_cell_type_assignment	the current cell type assignments (number_cells x total_rounds)
cell_type_num	the cell types associated with the current round
round	the current round

Value

the count and proportion for each cell type based on the current cell type assignments

plevritis-lab/CELESTA documentation built on Jan. 30, 2023, 3:32 p.m.