GetScore: GetScore

In plevritis-lab/CELESTA: Cell type identification with spatial information

GetScore

Description

Calculate scores using MSE

Usage

GetScore(activation_prob_to_use, prior_info, non_NA_index)

Arguments

activation_prob_to_use	the marker expression probabilities of the unassigned cells
prior_info	user-defined cell-type signature matrix. The data should contain two columns (name X and Y) for the x, y coordinates and a column for each protein marker. Each row represents the data for a single cell, including its x, y coordinates and expression for each protein marker.
non_NA_index	the index of the columns in current_pri_matrix that do not contain NA for a particular cell

Value

the score of the cell

plevritis-lab/CELESTA documentation built on Jan. 30, 2023, 3:32 p.m.