NeighborCellType: NeighborCellType

In plevritis-lab/CELESTA: Cell type identification with spatial information

NeighborCellType

Description

Find the cell types of the neighbors of unassigned cells

Usage

NeighborCellType(
  nb_list,
  current_cell_type_assignment,
  cell_type_num,
  round,
  unassigned_cells
)

Arguments

nb_list	the list of N-nearest neighbors
current_cell_type_assignment	the current cell type assignments (number_cells x total_rounds)
cell_type_num	the cell types associated with the current round
round	the current round
unassigned_cells	cells not assigned a cell type for each round and iteration

Value

the cell types of the neighbors of unassigned cells

plevritis-lab/CELESTA documentation built on Jan. 30, 2023, 3:32 p.m.