commonASV: Most common ASVs
In pmartinezarbizu/dada2pp: Miscelaneous Functions for Post-Processing dada2 Results.
commonASV R Documentation
Most common ASVs
Description
Retrieve the most common ASVs by total number of reads and total number of samples present
Usage
commonASV(x, taxa, n = 50)
Arguments
x
The community table with Taxon reads counts
n
Interger, Number of top ASVs to retrieve
Details
This function will order the ASVs by total number of reads and by
number of samples present and return two lists containing the of the n top ASVs
Value
Two data.frames
by_samp
data.frame with the top n ASVs by presence in samples
by_reads
data.frame with the top n ASVs by number of reads
Author(s)
Pedro Martinez Arbizu
See Also
ASV_outliers
pmartinezarbizu/dada2pp documentation built on Feb. 7, 2024, 7:01 a.m.
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| commonASV | R Documentation |
Most common ASVs
Description
Retrieve the most common ASVs by total number of reads and total number of samples present
Usage
commonASV(x, taxa, n = 50)
Arguments
x |
The community table with Taxon reads counts |
n |
Interger, Number of top ASVs to retrieve |
Details
This function will order the ASVs by total number of reads and by number of samples present and return two lists containing the of the n top ASVs
Value
Two data.frames
by_samp |
data.frame with the top n ASVs by presence in samples |
by_reads |
data.frame with the top n ASVs by number of reads |
Author(s)
Pedro Martinez Arbizu
See Also
ASV_outliers
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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