plot.barp_table: Method plot for object barp_table

In pmartinezarbizu/dada2pp: Miscelaneous Functions for Post-Processing dada2 Results.

Method plot for object barp_table

Description

Plots 4 barplots in one page using a barp_table object as input

Usage

## S3 method for class 'barp_table'
plot(
  x,
  main = "dada2sum",
  pal2table,
  oma1 = 12,
  ncol.leg = ceiling(nrow(x$table)/5),
  x.leg = -ncol(x$table) * 1.5,
  y.leg = -0.5,
  pt.cex = 2.5,
  x.int = 1
)

Arguments

x	Object of class barp_table
main	One of 'vsearchsum' or 'dada2sum' or a vector with 4 elements which are the titles the plots
pal2table	Object of class pal2table for matching colors to Taxa
oma1	Space on lower margin to allocate legend (passed to graphical parameter oma)
ncol.leg	Number of columns of legend
x.leg	X value for upper left corner of legend
y.leg	Y value for upper left corner of legend
pt.cex	Size of symbol in legend
x.int	Value passed to x.intersp (see ?legend )

Details

This function takes a table created by barp.table and creates 4 barplots whith absolute and relative number of reads and absolute and relative number of OTUs/ASV per Taxon

Value

A graph with 4 barplots

Author(s)

Pedro Martinez Arbizu

See Also

plot.barp_table

Examples

bp1 <- barp.table(meio[,9:27],meio$Group,sum)
colmeio <- pal2table( c(rownames(bp1$table),'Branchiopoda','Calanoida','Cyclopoida','Harpacticoida','Isopoda','Misophrioida','Ostracoda','Siphonostomatoida','Tanaidacea','Tantulocarida'),pal='c25bro2')
plot(bp1,pal2table=colmeio)

pmartinezarbizu/dada2pp documentation built on Feb. 7, 2024, 7:01 a.m.