multiadonis: Multiple Adonis Test for Taxon Table

In pmartinezarbizu/dada2pp: Miscelaneous Functions for Post-Processing dada2 Results.

Multiple Adonis Test for Taxon Table

Usage

multiadonis(
  datasets,
  fac,
  nboot = 1,
  rarefy = TRUE,
  frac = 0.5,
  balance = FALSE,
  loghell = TRUE,
  distance = "euclidean",
  ...
)

Arguments

datasets	a list of datasets
fac	factor for adonis (groups)
nboot	number of rarefied community datasets (bootstrap without replacement) to produce
frac	used to estimate the argument sample to be passed to rrarefy. Fraction (e.g.0.3) value corresponding to the minimum number of reads/obeservations per sample.
balance	TRUE or FALSE, if factors should be balanced
...	additional arguments for adonis (e.g permutations)

Value

A dataframe with results of adonis and results of adonis on rarefied dataset

Author(s)

Pedro Martinez Arbizu

See Also

adonis

Examples

datasets <- list('meio'= t(meio[,9:27]),'crust'= t(crust[,9:27]),'NeHaCyMi'= t(NeHaCyMi[,9:27]))
multiadonis(datasets,area,nboot=10,frac=0.5)
multiadonis(list('ir'=irc),fac=fac,loghell=TRUE,rarefy=FALSE,frac=1,nboot=1,balance=TRUE

pmartinezarbizu/dada2pp documentation built on Feb. 7, 2024, 7:01 a.m.