Files in pmoulos/metaseqR

An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms.

R/metaseqR-package.R R/metaseqr-data.R R/metaseqr.annotation.R R/metaseqr.argcheck.R R/metaseqr.count.R R/metaseqr.export.R R/metaseqr.filter.R R/metaseqr.json.R R/metaseqr.main.R R/metaseqr.meta.R R/metaseqr.norm.R R/metaseqr.plot.R R/metaseqr.query.R R/metaseqr.sim.R R/metaseqr.stat.R R/metaseqr.util.R R/zzz.R README.md inst/unitTests/test_estimate_aufc_weights.R inst/unitTests/test_metaseqr.R man/as.class.vector.Rd man/build.export.Rd man/calc.f1score.Rd man/calc.otr.Rd man/cddat.Rd man/cdplot.Rd man/check.contrast.format.Rd man/check.file.args.Rd man/check.graphics.file.Rd man/check.graphics.type.Rd man/check.libsize.Rd man/check.main.args.Rd man/check.num.args.Rd man/check.packages.Rd man/check.parallel.Rd man/check.text.args.Rd man/combine.bonferroni.Rd man/combine.maxp.Rd man/combine.minp.Rd man/combine.simes.Rd man/combine.weight.Rd man/construct.gene.model.Rd man/construct.utr.model.Rd man/diagplot.avg.ftd.Rd man/diagplot.boxplot.Rd man/diagplot.cor.Rd man/diagplot.de.heatmap.Rd man/diagplot.edaseq.Rd man/diagplot.filtered.Rd man/diagplot.ftd.Rd man/diagplot.mds.Rd man/diagplot.metaseqr.Rd man/diagplot.noiseq.Rd man/diagplot.noiseq.saturation.Rd man/diagplot.pairs.Rd man/diagplot.roc.Rd man/diagplot.venn.Rd man/diagplot.volcano.Rd man/disp.Rd man/downsample.counts.Rd man/estimate.aufc.weights.Rd man/estimate.sim.params.Rd man/filter.exons.Rd man/filter.genes.Rd man/filter.high.Rd man/filter.low.Rd man/fisher.method.Rd man/fisher.method.perm.Rd man/fisher.sum.Rd man/get.annotation.Rd man/get.arg.Rd man/get.biotypes.Rd man/get.bs.organism.Rd man/get.dataset.Rd man/get.defaults.Rd man/get.ensembl.annotation.Rd man/get.exon.attributes.Rd man/get.gc.content.Rd man/get.gene.attributes.Rd man/get.host.Rd man/get.preset.opts.Rd man/get.strict.biofilter.Rd man/get.transcript.utr.attributes.Rd man/get.ucsc.annotation.Rd man/get.ucsc.credentials.Rd man/get.ucsc.dbl.Rd man/get.ucsc.organism.Rd man/get.ucsc.query.Rd man/get.ucsc.tabledef.Rd man/get.ucsc.tbl.tpl.Rd man/get.valid.chrs.Rd man/get.weights.Rd man/graphics.close.Rd man/graphics.open.Rd man/hg19.exon.counts.Rd man/libsize.list.hg19.Rd man/libsize.list.mm9.Rd man/load.bs.genome.Rd man/log2disp.Rd man/make.avg.expression.Rd man/make.contrast.list.Rd man/make.export.list.Rd man/make.fold.change.Rd man/make.grid.Rd man/make.highcharts.points.Rd man/make.html.body.Rd man/make.html.cells.Rd man/make.html.header.Rd man/make.html.rows.Rd man/make.html.table.Rd man/make.matrix.Rd man/make.path.struct.Rd man/make.permutation.Rd man/make.project.path.Rd man/make.report.messages.Rd man/make.sample.list.Rd man/make.sim.data.sd.Rd man/make.sim.data.tcc.Rd man/make.stat.Rd man/make.transformation.Rd man/make.venn.areas.Rd man/make.venn.colorscheme.Rd man/make.venn.counts.Rd man/make.venn.pairs.Rd man/meta.perm.Rd man/meta.test.Rd man/meta.worker.Rd man/metaseqR-package.Rd man/metaseqr.Rd man/mlfo.Rd man/mm9.gene.counts.Rd man/nat2log.Rd man/normalize.deseq.Rd man/normalize.edaseq.Rd man/normalize.edger.Rd man/normalize.nbpseq.Rd man/normalize.noiseq.Rd man/read.targets.Rd man/read2count.Rd man/reduce.exons.Rd man/reduce.gene.data.Rd man/sample.list.hg19.Rd man/sample.list.mm9.Rd man/set.arg.Rd man/stat.bayseq.Rd man/stat.deseq.Rd man/stat.edger.Rd man/stat.limma.Rd man/stat.nbpseq.Rd man/stat.noiseq.Rd man/validate.alg.args.Rd man/validate.list.args.Rd man/wapply.Rd man/wp.adjust.Rd tests/runTests.R