posFused-class: Class for the object returned by 'positiveFusedLasso()'

In pneuvial/c3co: Cancer Cell Clonality using Copy-Number

Description

Class for the object returned by positiveFusedLasso()

Slots

Y

A list containing the original minor, major and total copy number signals.

Zt

A list containing the (final) minor, major and total copy number estimates for the latent features, as inferred by positiveFusedLasso().

Z0t

idem for the initial estimates.

W

A matrix containing weights inferred by positiveFusedLasso().

mu

A list containing the intercept vectors inferred by positiveFusedLasso().

E

A list containing estimates of minor copy number and major copy number inferred by positiveFusedLasso().

params

A numeric vector, the input parameters.

failure

A logical value indicating whether the estimation worked or failed (because of the non-invertibility of W^tW).

converged,iterations

Did the model fit converge and how many iterations did it run?

pneuvial/c3co documentation built on May 25, 2019, 10:21 a.m.