Wplot: Plot the weight matrix

Description Usage Arguments Value

Description

Plot the weight matrix

Usage

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Wplot(this, idxBest, rownamesW = NULL, col = NULL, margins = c(5, 7),
  posLegend = NA, listPheno, colsPheno, colLegend, labelLegend,
  cexCol = 1.5, ...)

## S4 method for signature 'c3coFit'
Wplot(this, idxBest, rownamesW = NULL, col = NULL,
  margins = c(5, 7), posLegend = NA, listPheno, colsPheno, colLegend,
  labelLegend, cexCol = 1.5, ...)

Arguments

this

An object of class c3coFit.

idxBest

A integer, the number of latent features.

rownamesW

A vector that contains identification of patients.

col

A vector that contains colors for the heatmap.

margins

A vector margins.

posLegend

Position of the legend to be passed to graphics::plot().

listPheno

A matrix that contains details on phenotype for each patient. Could be location or time point of tumors for example.

colsPheno

Matrix that contains colors for each type of variable in phenotype.

colLegend

Colors for clinical data.

labelLegend

Labels for clinical data.

cexCol

Size of labels of columns by (default 1.5).

...

Other parameters to personalize heatmap (see heatmap.3()).

Value

A heatmap of W.


pneuvial/c3co documentation built on May 25, 2019, 10:21 a.m.